Publications

2026

PREPRINT · bioRxiv

Systematic clustering alignment and feature characterization for single-cell omics using ACE-OF-Clust

Xiran Liu *, Ritam Singh , Sohini Ramachandran

TECHNICAL NOTE · Human Population Genetics and Genomics

KAlignedoscope: an interactive visualization tool for aligned clustering results

Anqi Guo , Sohini Ramachandran *, Xiran Liu *

TECHNICAL NOTE · Human Population Genetics and Genomics

Clumppling 2.0: A clustering-alignment program for population-structure analyses

Xiran Liu *, Noah A. Rosenberg , Sohini Ramachandran

2025

JOURNAL ARTICLE · Genome Research

ML-MAGES enables multivariate genetic association analyses with genes and effect size shrinkage

Xiran Liu *, Lorin Crawford , Sohini Ramachandran

JOURNAL ARTICLE · Theoretical Population Biology

Using mathematical constraints to explain narrow ranges for allele-sharing dissimilarities

Xiran Liu *, Zarif Ahsan , Noah A. Rosenberg

2024

PREPRINT · arXiv

Combinatorics of a dissimilarity measure for pairs of draws from discrete probability vectors on finite sets of objects

Zarif Ahsan , Xiran Liu , Noah A. Rosenberg *

JOURNAL ARTICLE · Bioinformatics

Clumppling: cluster matching and permutation program with integer linear programming

Xiran Liu *, Naama M. Kopelman , Noah A. Rosenberg *

2023

JOURNAL ARTICLE · Statistical Applications in Genetics and Molecular Biology

When is the allele-sharing dissimilarity between two populations exceeded by the allele-sharing dissimilarity of a population with itself?

Xiran Liu *, Zarif Ahsan , Tarun K. Martheswaran , Noah A. Rosenberg

2022

JOURNAL ARTICLE · Journal of Computational and Graphical Statistics

A Dirichlet model of alignment cost in mixed-membership unsupervised clustering

Xiran Liu , Naama M. Kopelman , Noah A. Rosenberg *

JOURNAL ARTICLE · Nature Communications

Deconvoluting complex correlates of COVID-19 severity with a multi-omic pandemic tracking strategy

Victoria N. Parikh , Alexander G. Ioannidis , David Jimenez-Morales , John E. Gorzynski , Hannah N. De Jong , Xiran Liu , and collaborators

JOURNAL ARTICLE · Evolutionary Human Sciences

Extracting hierarchical features of cultural variation using network-based clustering

Xiran Liu , Noah A. Rosenberg *, Gili Greenbaum *

2021

JOURNAL ARTICLE · Theoretical Population Biology

Effects of cultural transmission of surnaming decisions on the sex ratio at birth

Xiran Liu , Marcus W. Feldman *

2020

JOURNAL ARTICLE · Clinical Cancer Research

Diffusion histology imaging combining diffusion basis spectrum imaging (DBSI) and machine learning improves detection and classification of glioblastoma pathology

Zezhong Ye , Richard L. Price , Xiran Liu , and collaborators

Preprint

2026 · bioRxiv

Systematic clustering alignment and feature characterization for single-cell omics using ACE-OF-Clust

Xiran Liu *, Ritam Singh , Sohini Ramachandran

2024 · arXiv

Combinatorics of a dissimilarity measure for pairs of draws from discrete probability vectors on finite sets of objects

Zarif Ahsan , Xiran Liu , Noah A. Rosenberg *

Journal article

2025 · Genome Research

ML-MAGES enables multivariate genetic association analyses with genes and effect size shrinkage

Xiran Liu *, Lorin Crawford , Sohini Ramachandran

2025 · Theoretical Population Biology

Using mathematical constraints to explain narrow ranges for allele-sharing dissimilarities

Xiran Liu *, Zarif Ahsan , Noah A. Rosenberg

2024 · Bioinformatics

Clumppling: cluster matching and permutation program with integer linear programming

Xiran Liu *, Naama M. Kopelman , Noah A. Rosenberg *

2023 · Statistical Applications in Genetics and Molecular Biology

When is the allele-sharing dissimilarity between two populations exceeded by the allele-sharing dissimilarity of a population with itself?

Xiran Liu *, Zarif Ahsan , Tarun K. Martheswaran , Noah A. Rosenberg

2022 · Journal of Computational and Graphical Statistics

A Dirichlet model of alignment cost in mixed-membership unsupervised clustering

Xiran Liu , Naama M. Kopelman , Noah A. Rosenberg *

2022 · Nature Communications

Deconvoluting complex correlates of COVID-19 severity with a multi-omic pandemic tracking strategy

Victoria N. Parikh , Alexander G. Ioannidis , David Jimenez-Morales , John E. Gorzynski , Hannah N. De Jong , Xiran Liu , and collaborators

2022 · Evolutionary Human Sciences

Extracting hierarchical features of cultural variation using network-based clustering

Xiran Liu , Noah A. Rosenberg *, Gili Greenbaum *

2021 · Theoretical Population Biology

Effects of cultural transmission of surnaming decisions on the sex ratio at birth

Xiran Liu , Marcus W. Feldman *

2020 · Clinical Cancer Research

Diffusion histology imaging combining diffusion basis spectrum imaging (DBSI) and machine learning improves detection and classification of glioblastoma pathology

Zezhong Ye , Richard L. Price , Xiran Liu , and collaborators

Technical note

2026 · Human Population Genetics and Genomics

KAlignedoscope: an interactive visualization tool for aligned clustering results

Anqi Guo , Sohini Ramachandran *, Xiran Liu *

2026 · Human Population Genetics and Genomics

Clumppling 2.0: A clustering-alignment program for population-structure analyses

Xiran Liu *, Noah A. Rosenberg , Sohini Ramachandran